Mdanalysis Mailing List

Figure 1 from MDAnalysis: A toolkit for the analysis of molecular

Figure 1 from MDAnalysis: A toolkit for the analysis of molecular

MDAnalysis Workshop and Hackathon – MolSSI

MDAnalysis Workshop and Hackathon – MolSSI

Barnaba: Software for Analysis of Nucleic Acids Structures and

Barnaba: Software for Analysis of Nucleic Acids Structures and

NumFOCUS Projects Accepted to Inaugural Google Season of Docs - NumFOCUS

NumFOCUS Projects Accepted to Inaugural Google Season of Docs - NumFOCUS

MDAnalysis | Resources | Beckstein Lab

MDAnalysis | Resources | Beckstein Lab

notebook

notebook

IJMS | Free Full-Text | Identification and Evaluation of Inhibitors

IJMS | Free Full-Text | Identification and Evaluation of Inhibitors

Layered LnBaCo2O5+δ perovskite cathodes for solid oxide fuel cells

Layered LnBaCo2O5+δ perovskite cathodes for solid oxide fuel cells

md2 slides

md2 slides

Middleware Building Blocks for Workflow Systems

Middleware Building Blocks for Workflow Systems

MDAnalysis: A toolkit for the analysis of molecular dynamics simulations

MDAnalysis: A toolkit for the analysis of molecular dynamics simulations

MDAnalysis: A Python Package for the Rapid Analysis of Molecular

MDAnalysis: A Python Package for the Rapid Analysis of Molecular

Discipline, Level, Genre: Integrating Situational Perspectives in a

Discipline, Level, Genre: Integrating Situational Perspectives in a

Informational Descriptions, Explanations, and Procedures (Chapter 7

Informational Descriptions, Explanations, and Procedures (Chapter 7

Diffusion in Liquids from Molecular Dynamics Simulations

Diffusion in Liquids from Molecular Dynamics Simulations

Computation | Free Full-Text | NaRIBaS—A Scripting Framework for

Computation | Free Full-Text | NaRIBaS—A Scripting Framework for

Structures of the heart specific <fc>SERCA</fc>2a Ca<sup>2+</sup>â

Structures of the heart specific SERCA2a Ca2+â

MDWeb  Molecular Dynamics on Web

MDWeb Molecular Dynamics on Web

Structures, electronic properties, reactivity and dynamic studies of

Structures, electronic properties, reactivity and dynamic studies of

பக்கவாதத்தைத் தொடர்ந்த

பக்கவாதத்தைத் தொடர்ந்த

Current Research | George Diallinas

Current Research | George Diallinas

PyContact: Rapid, Customizable, and Visual Analysis of Noncovalent

PyContact: Rapid, Customizable, and Visual Analysis of Noncovalent

MMTF - an efficient file format for the transmission, visualization

MMTF - an efficient file format for the transmission, visualization

RIP-MD: a tool to study residue interaction networks in protein

RIP-MD: a tool to study residue interaction networks in protein

Protein Structure Networks

Protein Structure Networks

md2 slides

md2 slides

Identification of Ebola Virus Inhibitors Targeting GP2 Using

Identification of Ebola Virus Inhibitors Targeting GP2 Using

Molecules | Free Full-Text | Computational Screening and Analysis of

Molecules | Free Full-Text | Computational Screening and Analysis of

Comparing Structures and Sequences with MultiSeq

Comparing Structures and Sequences with MultiSeq

Papers & Results – Folding@home

Papers & Results – [email protected]

MDAnalysis: A Python Package for the Rapid Analysis of Molecular

MDAnalysis: A Python Package for the Rapid Analysis of Molecular

Data model, dictionaries, and desiderata for biomolecular simulation

Data model, dictionaries, and desiderata for biomolecular simulation

Simulation with Amber – Life in Computational Biology

Simulation with Amber – Life in Computational Biology

MDWeb  Molecular Dynamics on Web

MDWeb Molecular Dynamics on Web

The Lid Domain in Lipases: Structural and Functional Determinant of

The Lid Domain in Lipases: Structural and Functional Determinant of

PyContact: Rapid, Customizable, and Visual Analysis of Noncovalent

PyContact: Rapid, Customizable, and Visual Analysis of Noncovalent

MMTF#_#x2014

MMTF#_#x2014

Protein Structure Networks

Protein Structure Networks

Impact of Lipid Composition and Receptor Conformation on the Spatio

Impact of Lipid Composition and Receptor Conformation on the Spatio

Measuring Cortical Connectivity in Alzheimer's Disease as a Brain

Measuring Cortical Connectivity in Alzheimer's Disease as a Brain

Biotite: a unifying open source computational biology framework in

Biotite: a unifying open source computational biology framework in

Impact of Lipid Composition and Receptor Conformation on the Spatio

Impact of Lipid Composition and Receptor Conformation on the Spatio

Diffusion in Liquids from Molecular Dynamics Simulations

Diffusion in Liquids from Molecular Dynamics Simulations

Impact of Lipid Composition and Receptor Conformation on the Spatio

Impact of Lipid Composition and Receptor Conformation on the Spatio

Free Energy Landscape for the Entire Transport Cycle of Triose

Free Energy Landscape for the Entire Transport Cycle of Triose

Treatment Outcomes of Metastatic Colorectal Cancer Patients Treated

Treatment Outcomes of Metastatic Colorectal Cancer Patients Treated

Oliver Beckstein

Oliver Beckstein

Rittman Mead Consulting | Oracle FAQ

Rittman Mead Consulting | Oracle FAQ

Rotamer Dynamics: Analysis of Rotamers in Molecular Dynamics

Rotamer Dynamics: Analysis of Rotamers in Molecular Dynamics

Exploring PfDHFR reaction surface: A combined molecular dynamics and

Exploring PfDHFR reaction surface: A combined molecular dynamics and

00 - Showcase pentapeptide: a PyEMMA walkthrough — PyEMMA 2 5 5+9

00 - Showcase pentapeptide: a PyEMMA walkthrough — PyEMMA 2 5 5+9

Immunomodulation of Autoimmune and Inflammatory Diseases with

Immunomodulation of Autoimmune and Inflammatory Diseases with

Regarding writing a code to calculate hydrogen bond autocorrelation

Regarding writing a code to calculate hydrogen bond autocorrelation

Molecules | Free Full-Text | Computational Screening and Analysis of

Molecules | Free Full-Text | Computational Screening and Analysis of

Larger Theoretical Issues (Part III) - Register, Genre, and Style

Larger Theoretical Issues (Part III) - Register, Genre, and Style

GOVERNMENT

GOVERNMENT

Building a tightly coupled molecular dynamics workflow with multi

Building a tightly coupled molecular dynamics workflow with multi

Describing target language domains with #LancsBox

Describing target language domains with #LancsBox

Introduction

Introduction

ST-‐analyzer Tutorial

ST-‐analyzer Tutorial

The Web as a Continuous Space of Register Variation (Chapter 9

The Web as a Continuous Space of Register Variation (Chapter 9

3DNA Homepage -- Nucleic Acid Structures

3DNA Homepage -- Nucleic Acid Structures

Dask: Scalable analytics in Python

Dask: Scalable analytics in Python

Molecular Modeling and Bioinformatics Group

Molecular Modeling and Bioinformatics Group

Is it possible to create periodic bonds for a unit cell crystal

Is it possible to create periodic bonds for a unit cell crystal

Biotite: a unifying open source computational biology framework in

Biotite: a unifying open source computational biology framework in

Molecular Dynamics Studies of Histo-Blood Group Antigen Blocking

Molecular Dynamics Studies of Histo-Blood Group Antigen Blocking

QwikMD - Integrative Molecular Dynamics Tookit for Novices and Experts

QwikMD - Integrative Molecular Dynamics Tookit for Novices and Experts

How to use | LaSOM

How to use | LaSOM

MDAnalysis can be used with nglview to directly visualize molecules

MDAnalysis can be used with nglview to directly visualize molecules

How is python used in biomolecular sciences?

How is python used in biomolecular sciences?

Problem in RDF calculation · Issue #1891 · MDAnalysis/mdanalysis

Problem in RDF calculation · Issue #1891 · MDAnalysis/mdanalysis

Biomolecular Simulations February ppt download

Biomolecular Simulations February ppt download

Identification of Ebola Virus Inhibitors Targeting GP2 Using

Identification of Ebola Virus Inhibitors Targeting GP2 Using

Timeline: a VMD plugin for trajectory analysis

Timeline: a VMD plugin for trajectory analysis

A model to study the inhibition of nsP2B-nsP3 protease of dengue

A model to study the inhibition of nsP2B-nsP3 protease of dengue

DockoMatic: Automated Tool for Homology Modeling and Docking Studies

DockoMatic: Automated Tool for Homology Modeling and Docking Studies

Structural dynamics of supercooled water from quasielastic neutron

Structural dynamics of supercooled water from quasielastic neutron

Frontiers | PD-1 Dynamically Regulates Inflammation and Development

Frontiers | PD-1 Dynamically Regulates Inflammation and Development

The N-terminal amphipathic helix of Pex11p self-interacts to induce

The N-terminal amphipathic helix of Pex11p self-interacts to induce

Data model, dictionaries, and desiderata for biomolecular simulation

Data model, dictionaries, and desiderata for biomolecular simulation

About TOA | College of Agricultural Sciences | Oregon State University

About TOA | College of Agricultural Sciences | Oregon State University

Theoretical calculations, molecular dynamics simulations and

Theoretical calculations, molecular dynamics simulations and

Google Season of Docs · MDAnalysis/mdanalysis Wiki · GitHub

Google Season of Docs · MDAnalysis/mdanalysis Wiki · GitHub

The Lid Domain in Lipases: Structural and Functional Determinant of

The Lid Domain in Lipases: Structural and Functional Determinant of

mDCC_tools: characterizing multi-modal atomic motions in molecular

mDCC_tools: characterizing multi-modal atomic motions in molecular

Microbiology Society Journals | <em class=Natronolimnobius">

Microbiology Society Journals | Natronolimnobius

Molecular interaction studies on ellagic acid for its anticancer

Molecular interaction studies on ellagic acid for its anticancer

How is python used in biomolecular sciences?

How is python used in biomolecular sciences?

Analyzing molecular trajectories with MDAnalysis in SAMSON

Analyzing molecular trajectories with MDAnalysis in SAMSON

Molecular Dynamics Studies of Histo-Blood Group Antigen Blocking

Molecular Dynamics Studies of Histo-Blood Group Antigen Blocking

Rotamer Dynamics: Analysis of Rotamers in Molecular Dynamics

Rotamer Dynamics: Analysis of Rotamers in Molecular Dynamics

Protein Structure Networks

Protein Structure Networks

PDF) MDAnalysis: A toolkit for the analysis of molecular dynamics

PDF) MDAnalysis: A toolkit for the analysis of molecular dynamics

cgHeliParm: analysis of dsDNA helical parameters for coarse-grained

cgHeliParm: analysis of dsDNA helical parameters for coarse-grained

ReaxFF: reactive MD with graphical interface & analysis tools

ReaxFF: reactive MD with graphical interface & analysis tools

ExaViz: a flexible framework to analyse, steer and interact with

ExaViz: a flexible framework to analyse, steer and interact with

mDCC_tools: characterizing multi-modal atomic motions in molecular

mDCC_tools: characterizing multi-modal atomic motions in molecular

Dask: Scalable analytics in Python

Dask: Scalable analytics in Python

md2 slides

md2 slides